Analytical chemists at Stellenbosch University have identified rare natural compounds known as flavoalkaloids in Cannabis leaves for the first time, signaling that discarded plant material holds previously unrecognized chemical diversity. Analytical chemists in the LC-MS laboratory of the Central Analytical Facility and the Department of Chemistry and Polymer Science published the findings in the Journal of Chromatography A, revealing 79 phenolic compounds across three commercially grown South African strains.
Rare Compounds Hidden in Cannabis Leaves
Flavoalkaloids belong to a broader family of plant chemicals called phenolics, which plants produce naturally for pigmentation, defense, and protection against environmental stress. While flavonoids—a major subgroup within phenolics—attract heavy research interest due to their antioxidant, anti-inflammatory, and anti-carcinogenic properties, flavoalkaloids occur much less frequently in nature.
The Stellenbosch University team detected 79 phenolic compounds in total across three commercial strains. Of those, 25 had never been reported in Cannabis before, and 16 were tentatively identified as flavoalkaloids. Most of these rare compounds appeared primarily in just one of the three strains tested.
Advanced Chemistry Reveals What Earlier Tests Missed
Studying plant phenolics presents steep hurdles because the substances often appear at very low concentrations and feature widely varying chemical structures. Dr. Magriet Muller, first author on the paper and an analytical chemist in the LC-MS laboratory of the Central Analytical Facility, noted that separating and identifying individual components inside a complex plant sample is exceptionally difficult.
Did you know? Cannabis contains more than 750 distinct metabolites, yet researchers found surprisingly high variation in phenolic profiles across only three strains.
The breakthrough relied on analytical techniques Muller developed during her postgraduate studies in the Department of Chemistry and Polymer Science, which she previously tested on rooibos tea, grapes, and wine. Her methods pair comprehensive two-dimensional liquid chromatography with high-resolution mass spectrometry. According to Prof. André de Villiers, study leader and head of the analytical chemistry research group, the two-dimensional liquid chromatography achieved separation of the flavoalkaloids from much more abundant flavonoids, enabling the discovery.
Looking Beyond Cannabinoids in Plant Waste
While scientific inquiry typically centers on cannabinoids—the compounds responsible for the plant’s pharmacological and mood effects—the new findings underscore how much remains unknown about non-cannabinoid chemistry. De Villiers points out that leaves frequently treated as low-value plant material or waste deserve closer scrutiny because their rich phenolic profiles could prove relevant for future biomedical research.
Frequently Asked Questions
What are flavoalkaloids?
Flavoalkaloids are a rare group of natural plant compounds that combine structural features of flavonoids and alkaloids, belonging to the broader family of phenolic compounds.

How were the rare compounds discovered in Cannabis?
Researchers used comprehensive two-dimensional liquid chromatography combined with high-resolution mass spectrometry to separate rare flavoalkaloids from more abundant flavonoids in commercial Cannabis leaves.
Why are Cannabis leaves often considered waste?
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